STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
sipUSignal peptidase I U. (183 aa)    
Predicted Functional Partners:
sipS_2
Signal peptidase I S; Belongs to the peptidase S26 family.
 
  
 0.934
sipP
Signal peptidase I P; Belongs to the peptidase S26 family.
 
  
0.817
CUN50052.1
Sortase (surface protein transpeptidase).
 
     0.751
CUO01890.1
Cell division topological specificity factor MinE.
   
    0.701
CUN50079.1
Uncharacterised protein.
       0.642
lepA
Elongation factor 4; Required for accurate and efficient protein synthesis under certain stress conditions. May act as a fidelity factor of the translation reaction, by catalyzing a one-codon backward translocation of tRNAs on improperly translocated ribosomes. Back-translocation proceeds from a post-translocation (POST) complex to a pre- translocation (PRE) complex, thus giving elongation factor G a second chance to translocate the tRNAs correctly. Binds to ribosomes in a GTP- dependent manner.
  
  
 0.588
sipS_1
Signal peptidase I S; Belongs to the peptidase S26 family.
  
 
 
0.500
phoU
Phosphate transport system protein phoU homolog; Plays a role in the regulation of phosphate uptake.
   
    0.474
nusA
Transcription elongation protein nusA; Participates in both transcription termination and antitermination.
   
    0.474
mntR
Manganese transport regulator.
   
    0.470
Your Current Organism:
Dorea longicatena
NCBI taxonomy Id: 88431
Other names: CCUG 45247, D. longicatena, DSM 13814, Dorea longicatena Taras et al. 2002, Eubacterium sp. III-35, JCM 11232, strain 111-35
Server load: low (26%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.