STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
araC_1Arabinose operon regulatory protein. (322 aa)    
Predicted Functional Partners:
CUN66054.1
Conserved hypothetical integral membrane protein.
 
     0.899
ykoD
Putative HMP/thiamine import ATP-binding protein YkoD.
 
     0.882
ecfT_2
Energy-coupling factor transporter transmembrane protein EcfT.
 
     0.882
CUN65929.1
Putative multidrug export ATP-binding/permease protein SAV1866.
 
    0.876
CUN65960.1
Putative multidrug export ATP-binding/permease protein SAV1866.
 
    0.875
porA
Pyruvate synthase subunit porA.
     
 0.823
rpoA
DNA-directed RNA polymerase subunit alpha; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
    
   0.630
tetD_1
DNA-binding transcriptional regulator AraC.
  
 
   0.622
rhaS_3
L-rhamnose operon regulatory protein rhaS.
  
   0.585
adaA_1
Methylphosphotriester-DNA--protein-cysteine S-methyltransferase.
  
  
  0.583
Your Current Organism:
Dorea longicatena
NCBI taxonomy Id: 88431
Other names: CCUG 45247, D. longicatena, DSM 13814, Dorea longicatena Taras et al. 2002, Eubacterium sp. III-35, JCM 11232, strain 111-35
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