STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
yehU_1Probable sensor-like histidine kinase YehU. (495 aa)    
Predicted Functional Partners:
CUN76390.1
Uncharacterized response regulatory protein SA0215.
 
  0.987
lytR
Sensory transduction protein lytR.
 
 0.967
kinA
Sporulation kinase A.
  
 0.943
yehT
Probable transcriptional regulatory protein YehT.
 
 
  0.907
ypdC_1
Uncharacterized HTH-type transcriptional regulator ypdC.
 
  0.890
CUO25697.1
Uncharacterized response regulatory protein SA0215.
 
  0.889
CUN82348.1
Uncharacterized response regulatory protein SA0215.
 
  0.885
adaA_1-2
Uncharacterized response regulatory protein SA0215.
 
 
  0.883
yycG_2
Sensor histidine kinase YycG.
   
0.864
ytfQ_2
ABC transporter periplasmic-binding protein ytfQ precursor.
 
     0.859
Your Current Organism:
Dorea longicatena
NCBI taxonomy Id: 88431
Other names: CCUG 45247, D. longicatena, DSM 13814, Dorea longicatena Taras et al. 2002, Eubacterium sp. III-35, JCM 11232, strain 111-35
Server load: low (24%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.