STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CUO04955.1Uncharacterised protein family (UPF0104). (373 aa)    
Predicted Functional Partners:
ugtP
Processive diacylglycerol glucosyltransferase.
 
  
 0.911
pdaA_2
Probable polysaccharide deacetylase pdaA precursor.
  
    0.786
pat
Phosphinothricin N-acetyltransferase.
   
    0.570
sigK
RNA polymerase sigma-28 factor precursor; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released.
       0.509
hyaD_1
Hyaluronan synthase.
  
 
 0.481
hyaD_2
Hyaluronan synthase.
  
 
 0.481
hyaD_3
Hyaluronan synthase.
  
 
 0.481
hyaD_4
Hyaluronan synthase.
  
 
 0.481
CUO00870.1
Uncharacterized protein conserved in bacteria.
  
  
 0.458
dagK
Diacylglycerol kinase.
  
 
  0.447
Your Current Organism:
Dorea longicatena
NCBI taxonomy Id: 88431
Other names: CCUG 45247, D. longicatena, DSM 13814, Dorea longicatena Taras et al. 2002, Eubacterium sp. III-35, JCM 11232, strain 111-35
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.