ENSACDP00005006747 protein (Anser cygnoides)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

ENSACDP00005006747

annotation not available (531 aa)

Predicted Functional Partners:

DLGAP4

0.896

ENSACDP00005025837

0.751

SHANK2

0.655

TANC2

0.642

TANC1

0.633

RPL23

0.603

EML6

0.601

CLNS1A

0.568

BICD1

0.557

HIVEP3

0.545

Your Current Organism:

Anser cygnoides

NCBI taxonomy Id: 8845
Other names: A. cygnoides, Chinese goose, Swan goose, white Chinese goose

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
BICD1	EML6	ENSACDP00005000756	ENSACDP00005013235	Protein bicaudal D homolog 1 isoform X1.	Echinoderm microtubule-associated protein-like 6 isoform X1.	0.594
BICD1	ENSACDP00005006747	ENSACDP00005000756	ENSACDP00005006747	Protein bicaudal D homolog 1 isoform X1.	annotation not available	0.557
BICD1	HIVEP3	ENSACDP00005000756	ENSACDP00005002792	Protein bicaudal D homolog 1 isoform X1.	Human immunodeficiency virus type I enhancer-binding protein.	0.539
BICD1	RPL23	ENSACDP00005000756	ENSACDP00005005278	Protein bicaudal D homolog 1 isoform X1.	Large subunit ribosomal protein L23e.	0.603
CLNS1A	ENSACDP00005006747	ENSACDP00005013365	ENSACDP00005006747	Chloride channel, nucleotide-sensitive, 1A.	annotation not available	0.568
DLGAP4	ENSACDP00005006747	ENSACDP00005006738	ENSACDP00005006747	Disks large-associated protein 4 isoform X1.	annotation not available	0.896
DLGAP4	ENSACDP00005025837	ENSACDP00005006738	ENSACDP00005025837	Disks large-associated protein 4 isoform X1.	SH3 and multiple ankyrin repeat domains protein 3-like isoform X1.	0.751
DLGAP4	SHANK2	ENSACDP00005006738	ENSACDP00005020911	Disks large-associated protein 4 isoform X1.	SH3 and multiple ankyrin repeat domains protein 2 isoform X1.	0.655
EML6	BICD1	ENSACDP00005013235	ENSACDP00005000756	Echinoderm microtubule-associated protein-like 6 isoform X1.	Protein bicaudal D homolog 1 isoform X1.	0.594
EML6	ENSACDP00005006747	ENSACDP00005013235	ENSACDP00005006747	Echinoderm microtubule-associated protein-like 6 isoform X1.	annotation not available	0.601
EML6	HIVEP3	ENSACDP00005013235	ENSACDP00005002792	Echinoderm microtubule-associated protein-like 6 isoform X1.	Human immunodeficiency virus type I enhancer-binding protein.	0.598
EML6	RPL23	ENSACDP00005013235	ENSACDP00005005278	Echinoderm microtubule-associated protein-like 6 isoform X1.	Large subunit ribosomal protein L23e.	0.692
ENSACDP00005006747	BICD1	ENSACDP00005006747	ENSACDP00005000756	annotation not available	Protein bicaudal D homolog 1 isoform X1.	0.557
ENSACDP00005006747	CLNS1A	ENSACDP00005006747	ENSACDP00005013365	annotation not available	Chloride channel, nucleotide-sensitive, 1A.	0.568
ENSACDP00005006747	DLGAP4	ENSACDP00005006747	ENSACDP00005006738	annotation not available	Disks large-associated protein 4 isoform X1.	0.896
ENSACDP00005006747	EML6	ENSACDP00005006747	ENSACDP00005013235	annotation not available	Echinoderm microtubule-associated protein-like 6 isoform X1.	0.601
ENSACDP00005006747	ENSACDP00005025837	ENSACDP00005006747	ENSACDP00005025837	annotation not available	SH3 and multiple ankyrin repeat domains protein 3-like isoform X1.	0.751
ENSACDP00005006747	HIVEP3	ENSACDP00005006747	ENSACDP00005002792	annotation not available	Human immunodeficiency virus type I enhancer-binding protein.	0.545
ENSACDP00005006747	RPL23	ENSACDP00005006747	ENSACDP00005005278	annotation not available	Large subunit ribosomal protein L23e.	0.603
ENSACDP00005006747	SHANK2	ENSACDP00005006747	ENSACDP00005020911	annotation not available	SH3 and multiple ankyrin repeat domains protein 2 isoform X1.	0.655