C1D protein (Anser cygnoides) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

C1D

Nuclear nucleic acid-binding protein C1D. (148 aa)

Predicted Functional Partners:

EXOSC10

0.997

EXOSC1

0.994

EXOSC9

0.993

EXOSC2

0.992

EXOSC8

0.991

EXOSC3

0.980

MTREX

0.979

EXOSC7

0.978

EXOSC4

0.976

MPHOSPH6

0.970

Your Current Organism:

Anser cygnoides

NCBI taxonomy Id: 8845
Other names: A. cygnoides, Chinese goose, Swan goose, white Chinese goose

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
C1D	EXOSC1	ENSACDP00005011504	ENSACDP00005023264	Nuclear nucleic acid-binding protein C1D.	Exosome component 1.	0.994
C1D	EXOSC10	ENSACDP00005011504	ENSACDP00005013383	Nuclear nucleic acid-binding protein C1D.	Exosome component 10.	0.997
C1D	EXOSC2	ENSACDP00005011504	ENSACDP00005026595	Nuclear nucleic acid-binding protein C1D.	Exosome complex component RRP4-like.	0.992
C1D	EXOSC3	ENSACDP00005011504	ENSACDP00005022203	Nuclear nucleic acid-binding protein C1D.	Exosome complex component RRP40.	0.980
C1D	EXOSC4	ENSACDP00005011504	ENSACDP00005025326	Nuclear nucleic acid-binding protein C1D.	Exosome component 4.	0.976
C1D	EXOSC7	ENSACDP00005011504	ENSACDP00005011157	Nuclear nucleic acid-binding protein C1D.	Exosome complex component RRP42.	0.978
C1D	EXOSC8	ENSACDP00005011504	ENSACDP00005007586	Nuclear nucleic acid-binding protein C1D.	Exosome complex component RRP43.	0.991
C1D	EXOSC9	ENSACDP00005011504	ENSACDP00005016131	Nuclear nucleic acid-binding protein C1D.	Exosome complex component RRP45 isoform X1.	0.993
C1D	MPHOSPH6	ENSACDP00005011504	ENSACDP00005003435	Nuclear nucleic acid-binding protein C1D.	M-phase phosphoprotein 6, animal type.	0.970
C1D	MTREX	ENSACDP00005011504	ENSACDP00005011136	Nuclear nucleic acid-binding protein C1D.	Superkiller viralicidic activity 2-like 2.	0.979
EXOSC1	C1D	ENSACDP00005023264	ENSACDP00005011504	Exosome component 1.	Nuclear nucleic acid-binding protein C1D.	0.994
EXOSC1	EXOSC10	ENSACDP00005023264	ENSACDP00005013383	Exosome component 1.	Exosome component 10.	0.996
EXOSC1	EXOSC2	ENSACDP00005023264	ENSACDP00005026595	Exosome component 1.	Exosome complex component RRP4-like.	0.996
EXOSC1	EXOSC3	ENSACDP00005023264	ENSACDP00005022203	Exosome component 1.	Exosome complex component RRP40.	0.997
EXOSC1	EXOSC4	ENSACDP00005023264	ENSACDP00005025326	Exosome component 1.	Exosome component 4.	0.995
EXOSC1	EXOSC7	ENSACDP00005023264	ENSACDP00005011157	Exosome component 1.	Exosome complex component RRP42.	0.998
EXOSC1	EXOSC8	ENSACDP00005023264	ENSACDP00005007586	Exosome component 1.	Exosome complex component RRP43.	0.997
EXOSC1	EXOSC9	ENSACDP00005023264	ENSACDP00005016131	Exosome component 1.	Exosome complex component RRP45 isoform X1.	0.996
EXOSC1	MPHOSPH6	ENSACDP00005023264	ENSACDP00005003435	Exosome component 1.	M-phase phosphoprotein 6, animal type.	0.976
EXOSC1	MTREX	ENSACDP00005023264	ENSACDP00005011136	Exosome component 1.	Superkiller viralicidic activity 2-like 2.	0.982