DPF3 protein (Anser cygnoides) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

DPF3

Double PHD fingers 3. (388 aa)

Predicted Functional Partners:

SMARCE1

0.794

SMARCB1

0.781

ACTL6A

0.696

ARID1B

0.684

ARID2

0.677

PBRM1

0.675

ARID1A

0.635

SMARCD1

0.608

ENSACDP00005012928

0.608

SMARCC1

0.601

Your Current Organism:

Anser cygnoides

NCBI taxonomy Id: 8845
Other names: A. cygnoides, Chinese goose, Swan goose, white Chinese goose

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ACTL6A	ARID1A	ENSACDP00005000330	ENSACDP00005003416	Actin-like protein 6A.	AT-rich interactive domain-containing protein 1A isoform X1.	0.851
ACTL6A	ARID1B	ENSACDP00005000330	ENSACDP00005025903	Actin-like protein 6A.	AT-rich interactive domain-containing protein 1B isoform X1.	0.851
ACTL6A	ARID2	ENSACDP00005000330	ENSACDP00005023599	Actin-like protein 6A.	LOW QUALITY PROTEIN: AT-rich interactive domain-containing protein 2.	0.939
ACTL6A	DPF3	ENSACDP00005000330	ENSACDP00005012790	Actin-like protein 6A.	Double PHD fingers 3.	0.696
ACTL6A	ENSACDP00005012928	ENSACDP00005000330	ENSACDP00005012928	Actin-like protein 6A.	annotation not available	0.895
ACTL6A	PBRM1	ENSACDP00005000330	ENSACDP00005000775	Actin-like protein 6A.	Protein polybromo-1 isoform X1.	0.980
ACTL6A	SMARCB1	ENSACDP00005000330	ENSACDP00005000170	Actin-like protein 6A.	SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily B member 1.	0.992
ACTL6A	SMARCC1	ENSACDP00005000330	ENSACDP00005013915	Actin-like protein 6A.	SWI/SNF related-matrix-associated actin-dependent regulator of chromatin subfamily C.	0.930
ACTL6A	SMARCD1	ENSACDP00005000330	ENSACDP00005006846	Actin-like protein 6A.	SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily D member 1.	0.895
ACTL6A	SMARCE1	ENSACDP00005000330	ENSACDP00005011911	Actin-like protein 6A.	SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily E, member 1.	0.969
ARID1A	ACTL6A	ENSACDP00005003416	ENSACDP00005000330	AT-rich interactive domain-containing protein 1A isoform X1.	Actin-like protein 6A.	0.851
ARID1A	ARID1B	ENSACDP00005003416	ENSACDP00005025903	AT-rich interactive domain-containing protein 1A isoform X1.	AT-rich interactive domain-containing protein 1B isoform X1.	0.802
ARID1A	ARID2	ENSACDP00005003416	ENSACDP00005023599	AT-rich interactive domain-containing protein 1A isoform X1.	LOW QUALITY PROTEIN: AT-rich interactive domain-containing protein 2.	0.750
ARID1A	DPF3	ENSACDP00005003416	ENSACDP00005012790	AT-rich interactive domain-containing protein 1A isoform X1.	Double PHD fingers 3.	0.635
ARID1A	ENSACDP00005012928	ENSACDP00005003416	ENSACDP00005012928	AT-rich interactive domain-containing protein 1A isoform X1.	annotation not available	0.873
ARID1A	PBRM1	ENSACDP00005003416	ENSACDP00005000775	AT-rich interactive domain-containing protein 1A isoform X1.	Protein polybromo-1 isoform X1.	0.862
ARID1A	SMARCB1	ENSACDP00005003416	ENSACDP00005000170	AT-rich interactive domain-containing protein 1A isoform X1.	SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily B member 1.	0.904
ARID1A	SMARCC1	ENSACDP00005003416	ENSACDP00005013915	AT-rich interactive domain-containing protein 1A isoform X1.	SWI/SNF related-matrix-associated actin-dependent regulator of chromatin subfamily C.	0.827
ARID1A	SMARCD1	ENSACDP00005003416	ENSACDP00005006846	AT-rich interactive domain-containing protein 1A isoform X1.	SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily D member 1.	0.873
ARID1A	SMARCE1	ENSACDP00005003416	ENSACDP00005011911	AT-rich interactive domain-containing protein 1A isoform X1.	SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily E, member 1.	0.923