STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CAPN6Calpain-6; Belongs to the peptidase C2 family. (647 aa)    
Predicted Functional Partners:
CAPNS1
Calpain small subunit 1.
 
 
 0.892
CAST
Calpastatin.
    
 0.791
GCA
Grancalcin.
   
 0.631
SRI
Sorcin.
   
 0.631
PDCD6
Programmed cell death 6.
   
 0.631
PEF1
Peflin.
   
 0.631
LRGUK
Leucine-rich repeat and guanylate kinase domain-containing protein.
    
 
 0.615
LOC104874823
Caspase-12; Belongs to the peptidase C14A family.
    
 0.500
LOC104874822
Caspase-1; Belongs to the peptidase C14A family.
    
 0.500
TLN2
Talin-2.
    
 0.483
Your Current Organism:
Fukomys damarensis
NCBI taxonomy Id: 885580
Other names: Coetomys damarensis, Cryptomys damarensis, Damara mole rat, Damara mole-rat, F. damarensis
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.