STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AGA24574.1PFAM: Protein of unknown function (DUF820). (229 aa)    
Predicted Functional Partners:
AGA31332.1
PFAM: Protein of unknown function (DUF820).
  
     0.764
AGA25476.1
PFAM: Protein of unknown function (DUF820).
  
     0.758
AGA31592.1
PFAM: Protein of unknown function (DUF820).
  
     0.745
AGA28849.1
PFAM: HNH endonuclease; manually curated.
  
     0.742
AGA24634.1
Hypothetical protein.
  
     0.729
AGA29073.1
TIGRFAM: ABC exporter membrane fusion protein, DevB family.
  
     0.668
AGA31555.1
PFAM: Protein of unknown function (DUF820).
  
     0.664
AGA29074.1
ABC-type antimicrobial peptide transport system, permease component; PFAM: Predicted permease; TIGRFAM: DevC protein.
  
     0.644
AGA31556.1
PFAM: Protein of unknown function (DUF820).
  
     0.634
AGA29075.1
DevC protein; PFAM: Predicted permease; TIGRFAM: DevC protein.
  
     0.632
Your Current Organism:
Singulisphaera acidiphila
NCBI taxonomy Id: 886293
Other names: S. acidiphila DSM 18658, Singulisphaera acidiphila DSM 18658, Singulisphaera acidiphila MOB10, Singulisphaera acidiphila str. DSM 18658, Singulisphaera acidiphila strain DSM 18658
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.