STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AGA24612.1PFAM: Protein of unknown function (DUF1648). (172 aa)    
Predicted Functional Partners:
AGA24778.1
Hypothetical protein.
  
     0.742
AGA30331.1
Hypothetical protein.
  
     0.662
AGA29390.1
Hypothetical protein.
  
     0.659
AGA25988.1
Hypothetical protein.
  
     0.655
AGA30769.1
Hypothetical protein.
  
     0.634
AGA31408.1
Hypothetical protein.
  
     0.615
AGA26309.1
Site-specific recombinase XerD; PFAM: Phage integrase family; Belongs to the 'phage' integrase family.
  
     0.591
AGA31343.1
Hypothetical protein.
  
     0.575
AGA26806.1
PFAM: Sigma-70, region 4; Sigma-70 region 2; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; Belongs to the sigma-70 factor family. ECF subfamily.
  
     0.559
AGA29140.1
HEAT repeat-containing protein.
  
     0.556
Your Current Organism:
Singulisphaera acidiphila
NCBI taxonomy Id: 886293
Other names: S. acidiphila DSM 18658, Singulisphaera acidiphila DSM 18658, Singulisphaera acidiphila MOB10, Singulisphaera acidiphila str. DSM 18658, Singulisphaera acidiphila strain DSM 18658
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.