STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
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Gene Fusion
Cooccurrence
Coexpression
Experiments
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Textmining
[Homology]
Score
AGA24804.1Putative amidohydrolase; PFAM: Carbon-nitrogen hydrolase. (460 aa)    
Predicted Functional Partners:
AGA27797.1
Peptidylarginine deiminase-like enzyme; PFAM: Porphyromonas-type peptidyl-arginine deiminase; Belongs to the agmatine deiminase family.
 
  
 0.662
AGA28261.1
Hypothetical protein.
  
     0.547
AGA27748.1
PFAM: Protein of unknown function (DUF1559).
  
     0.524
AGA28449.1
Putative transcription factor, MBF1 like protein; PFAM: Helix-turn-helix.
  
     0.448
AGA29280.1
PFAM: Cytochrome c; TIGRFAM: putative membrane-bound dehydrogenase domain; putative heme-binding domain, Pirellula/Verrucomicrobium type.
  
    0.432
AGA24803.1
PFAM: Bacterial regulatory helix-turn-helix protein, lysR family; LysR substrate binding domain; TIGRFAM: ModE molybdate transport repressor domain; Belongs to the LysR transcriptional regulatory family.
  
    0.412
AGA27303.1
Hypothetical protein.
  
     0.412
AGA29021.1
Putative TIM-barrel fold metal-dependent hydrolase; PFAM: Amidohydrolase; COG3618.
  
     0.412
AGA28794.1
Methyltransferase family protein; PFAM: Methyltransferase domain.
  
     0.411
AGA27849.1
PFAM: Aminotransferase class I and II.
 
  
 0.407
Your Current Organism:
Singulisphaera acidiphila
NCBI taxonomy Id: 886293
Other names: S. acidiphila DSM 18658, Singulisphaera acidiphila DSM 18658, Singulisphaera acidiphila MOB10, Singulisphaera acidiphila str. DSM 18658, Singulisphaera acidiphila strain DSM 18658
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.