STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AGA24856.1Selenocysteine synthase (seryl-tRNASer selenium transferase); PFAM: L-seryl-tRNA selenium transferase. (398 aa)    
Predicted Functional Partners:
AGA25479.1
PFAM: KDPG and KHG aldolase; TIGRFAM: Entner-Doudoroff aldolase.
    
  0.900
AGA31084.1
K+ transport system, NAD-binding component; PFAM: TrkA-N domain; TrkA-C domain.
  
    0.644
AGA29294.1
K+ transport system, NAD-binding component; PFAM: Ion channel; TrkA-N domain; TrkA-C domain.
   
    0.597
AGA29317.1
Hypothetical protein.
  
     0.582
AGA27247.1
Hypothetical protein.
  
     0.581
AGA27578.1
PFAM: ThiS family; TIGRFAM: molybdopterin converting factor, subunit 1, non-archaeal.
    
   0.495
AGA30740.1
PFAM: ThiS family; TIGRFAM: MoaD family protein, archaeal.
    
   0.495
AGA27881.1
Hypothetical protein.
  
     0.455
AGA26427.1
Hypothetical protein.
  
     0.451
AGA28142.1
Methylase involved in ubiquinone/menaquinone biosynthesis; PFAM: Methyltransferase domain.
  
     0.448
Your Current Organism:
Singulisphaera acidiphila
NCBI taxonomy Id: 886293
Other names: S. acidiphila DSM 18658, Singulisphaera acidiphila DSM 18658, Singulisphaera acidiphila MOB10, Singulisphaera acidiphila str. DSM 18658, Singulisphaera acidiphila strain DSM 18658
Server load: medium (50%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.