STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AGA24878.1Putative TIM-barrel fold metal-dependent hydrolase; PFAM: Amidohydrolase; COG3618. (339 aa)    
Predicted Functional Partners:
AGA29483.1
PFAM: Demethylmenaquinone methyltransferase.
 
   
 0.599
AGA27494.1
PFAM: D-galactarate dehydratase / Altronate hydrolase, C terminus; SAF domain.
 
   
 0.516
AGA26278.1
Putative dehydrogenase; PFAM: Oxidoreductase family, C-terminal alpha/beta domain; Oxidoreductase family, NAD-binding Rossmann fold.
 
     0.513
AGA24877.1
Putative membrane protein; PFAM: Rhomboid family.
       0.507
AGA30542.1
PFAM: Demethylmenaquinone methyltransferase.
 
   
 0.489
AGA29358.1
Fucose permease; PFAM: Major Facilitator Superfamily.
 
  
 0.483
AGA31418.1
PFAM: Demethylmenaquinone methyltransferase.
 
   
 0.483
AGA25107.1
Putative dehydrogenase; PFAM: Oxidoreductase family, NAD-binding Rossmann fold; Oxidoreductase family, C-terminal alpha/beta domain.
 
     0.461
AGA27099.1
Theronine dehydrogenase-like Zn-dependent dehydrogenase; PFAM: Alcohol dehydrogenase GroES-like domain; Zinc-binding dehydrogenase; TIGRFAM: 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase.
 
    0.402
Your Current Organism:
Singulisphaera acidiphila
NCBI taxonomy Id: 886293
Other names: S. acidiphila DSM 18658, Singulisphaera acidiphila DSM 18658, Singulisphaera acidiphila MOB10, Singulisphaera acidiphila str. DSM 18658, Singulisphaera acidiphila strain DSM 18658
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.