STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AGA24998.1Hypothetical protein. (213 aa)    
Predicted Functional Partners:
AGA24999.1
Hypothetical protein; PFAM: SPFH domain / Band 7 family.
 
     0.925
AGA26487.1
Hypothetical protein.
  
     0.623
AGA25988.1
Hypothetical protein.
  
     0.620
AGA28837.1
Putative phosphoesterase or phosphohydrolase.
  
     0.562
AGA30331.1
Hypothetical protein.
  
     0.549
AGA26510.1
Hypothetical protein.
  
     0.548
AGA26078.1
Hypothetical protein.
  
     0.535
AGA28783.1
Hypothetical protein.
  
     0.508
AGA29390.1
Hypothetical protein.
  
     0.503
AGA29272.1
Type II secretory pathway, component PulD; PFAM: Bacterial type II and III secretion system protein; Belongs to the bacterial secretin family.
  
     0.502
Your Current Organism:
Singulisphaera acidiphila
NCBI taxonomy Id: 886293
Other names: S. acidiphila DSM 18658, Singulisphaera acidiphila DSM 18658, Singulisphaera acidiphila MOB10, Singulisphaera acidiphila str. DSM 18658, Singulisphaera acidiphila strain DSM 18658
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