STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AGA25086.1PFAM: NAD dependent epimerase/dehydratase family. (343 aa)    
Predicted Functional Partners:
AGA25085.1
Dihydrodipicolinate synthase/N-acetylneuraminate lyase; PFAM: Dihydrodipicolinate synthetase family; Belongs to the DapA family.
 
     0.896
AGA25083.1
Putative TIM-barrel fold metal-dependent hydrolase; PFAM: Amidohydrolase.
 
     0.800
AGA25084.1
Putative TIM-barrel fold metal-dependent hydrolase; PFAM: Amidohydrolase.
 
     0.772
AGA26732.1
Putative dehydrogenase; PFAM: Oxidoreductase family, NAD-binding Rossmann fold.
  
    0.742
AGA30980.1
Putative TIM-barrel fold metal-dependent hydrolase; PFAM: Amidohydrolase.
  
     0.656
AGA27116.1
Dienelactone hydrolase-like enzyme.
  
     0.652
AGA30979.1
Putative TIM-barrel fold metal-dependent hydrolase; PFAM: Amidohydrolase.
  
     0.635
rpsZ
Ribosomal protein S14; Binds 16S rRNA, required for the assembly of 30S particles and may also be responsible for determining the conformation of the 16S rRNA at the A site.
   
  0.622
rpsS
Ribosomal protein S19, bacterial/organelle; Protein S19 forms a complex with S13 that binds strongly to the 16S ribosomal RNA.
   
  0.622
AGA31258.1
Nicotinamidase-like amidase; PFAM: Isochorismatase family.
  
    0.614
Your Current Organism:
Singulisphaera acidiphila
NCBI taxonomy Id: 886293
Other names: S. acidiphila DSM 18658, Singulisphaera acidiphila DSM 18658, Singulisphaera acidiphila MOB10, Singulisphaera acidiphila str. DSM 18658, Singulisphaera acidiphila strain DSM 18658
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.