STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AGA25166.1Hypothetical protein. (304 aa)    
Predicted Functional Partners:
AGA26922.1
Metal-dependent hydrolase, beta-lactamase superfamily III.
  
     0.694
AGA27842.1
Hypothetical protein.
  
     0.622
AGA30620.1
Putative O-linked N-acetylglucosamine transferase, SPINDLY family; PFAM: Tetratricopeptide repeat.
 
   0.540
AGA31070.1
Methyltransferase family protein.
  
     0.506
AGA31563.1
Trypsin-like serine protease with C-terminal PDZ domain; PFAM: Trypsin.
  
    0.498
AGA29370.1
PFAM: Protein of unknown function (DUF3754).
  
     0.480
AGA28392.1
GATA Zn-finger-containing transcription factor; PFAM: Phage portal protein.
  
     0.455
AGA26566.1
Hypothetical protein.
   
 
 0.453
AGA26539.1
Dienelactone hydrolase family protein.
  
     0.444
AGA26451.1
Leucine Rich Repeat (LRR)-containing protein.
  
     0.433
Your Current Organism:
Singulisphaera acidiphila
NCBI taxonomy Id: 886293
Other names: S. acidiphila DSM 18658, Singulisphaera acidiphila DSM 18658, Singulisphaera acidiphila MOB10, Singulisphaera acidiphila str. DSM 18658, Singulisphaera acidiphila strain DSM 18658
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