STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AGA25216.1PFAM: Protein of unknown function DUF86. (116 aa)    
Predicted Functional Partners:
AGA25215.1
PFAM: Nucleotidyltransferase domain.
 
  
 0.970
AGA28214.1
PFAM: Uncharacterized protein conserved in bacteria (DUF2136).
  
  
  0.588
AGA27795.1
PFAM: Uncharacterized protein conserved in bacteria (DUF2136).
  
  
  0.585
AGA30872.1
PFAM: Uncharacterized protein conserved in bacteria (DUF2136).
  
  
  0.567
AGA24885.1
Prevent-host-death family protein; Antitoxin component of a type II toxin-antitoxin (TA) system.
 
     0.566
AGA27123.1
PFAM: Uncharacterized protein conserved in bacteria (DUF2136).
  
  
  0.561
AGA24884.1
Hypothetical protein; PFAM: PIN domain.
  
   
 0.537
AGA25214.1
PFAM: Protein of unknown function (DUF820).
 
     0.532
Your Current Organism:
Singulisphaera acidiphila
NCBI taxonomy Id: 886293
Other names: S. acidiphila DSM 18658, Singulisphaera acidiphila DSM 18658, Singulisphaera acidiphila MOB10, Singulisphaera acidiphila str. DSM 18658, Singulisphaera acidiphila strain DSM 18658
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.