STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AGA25280.1PFAM: ECF sigma factor; TIGRFAM: RNA polymerase sigma factor, sigma-70 family. (203 aa)    
Predicted Functional Partners:
AGA25279.1
PFAM: Protein kinase domain.
 
 
   0.820
AGA29223.1
Hypothetical protein.
  
    0.731
AGA30047.1
Hypothetical protein.
  
     0.722
AGA26690.1
Hypothetical protein.
  
     0.709
AGA27734.1
PFAM: Protein of unknown function (DUF1559).
  
     0.702
AGA29349.1
Hypothetical protein.
  
    0.697
AGA25824.1
Hypothetical protein.
  
     0.690
AGA25346.1
Hypothetical protein.
  
 
   0.683
AGA27593.1
Hypothetical protein.
  
     0.683
AGA29722.1
Hypothetical protein.
  
     0.678
Your Current Organism:
Singulisphaera acidiphila
NCBI taxonomy Id: 886293
Other names: S. acidiphila DSM 18658, Singulisphaera acidiphila DSM 18658, Singulisphaera acidiphila MOB10, Singulisphaera acidiphila str. DSM 18658, Singulisphaera acidiphila strain DSM 18658
Server load: low (40%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.