STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AGA25296.1PFAM: PhoD-like phosphatase. (531 aa)    
Predicted Functional Partners:
AGA24726.1
PFAM: Alkaline phosphatase.
  
 
 0.943
folE
PFAM: GTP cyclohydrolase I; TIGRFAM: GTP cyclohydrolase I.
    
 0.920
AGA31291.1
PFAM: PhoD-like phosphatase.
  
  
 
0.901
AGA25622.1
PFAM: 6-pyruvoyl tetrahydropterin synthase.
     
  0.900
AGA29982.1
PFAM: 6-pyruvoyl tetrahydropterin synthase; TIGRFAM: queuosine biosynthesis protein QueD; 6-pyruvoyl tetrahydropterin synthase/QueD family protein.
     
  0.900
AGA24855.1
Hypothetical protein.
    
 0.568
AGA28097.1
3-phytase (myo-inositol-hexaphosphate 3-phosphohydrolase); PFAM: Phytase.
   
 0.542
AGA25297.1
Nicotinamidase-like amidase; PFAM: Isochorismatase family.
       0.438
AGA25295.1
Hypothetical protein.
       0.422
Your Current Organism:
Singulisphaera acidiphila
NCBI taxonomy Id: 886293
Other names: S. acidiphila DSM 18658, Singulisphaera acidiphila DSM 18658, Singulisphaera acidiphila MOB10, Singulisphaera acidiphila str. DSM 18658, Singulisphaera acidiphila strain DSM 18658
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.