STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AGA25309.1PFAM: Sigma-70 region 2; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; Belongs to the sigma-70 factor family. ECF subfamily. (204 aa)    
Predicted Functional Partners:
AGA29813.1
PFAM: Protein of unknown function (DUF1549); Protein of unknown function (DUF1553).
  
     0.660
AGA26437.1
PFAM: Sigma-70, region 4; TIGRFAM: RNA polymerase sigma-70 factor, Planctomycetaceae-specific subfamily 1; RNA polymerase sigma factor, sigma-70 family.
  
     0.654
AGA29482.1
PFAM: Prolyl oligopeptidase family.
  
     0.654
AGA29814.1
Hypothetical protein.
  
     0.654
AGA25094.1
Hypothetical protein.
  
     0.652
AGA30697.1
Hypothetical protein.
  
     0.615
AGA25896.1
PFAM: Bacterial Ig-like domain (group 2); Protein of unknown function (DUF1549); Protein of unknown function (DUF1553).
  
     0.584
AGA30217.1
PFAM: Bacterial Ig-like domain (DUF1927).
  
     0.577
AGA28771.1
PFAM: Domain of Unknown Function (DUF1080).
  
     0.556
AGA27113.1
PFAM: Protein of unknown function (DUF1549); Protein of unknown function (DUF1553).
  
     0.555
Your Current Organism:
Singulisphaera acidiphila
NCBI taxonomy Id: 886293
Other names: S. acidiphila DSM 18658, Singulisphaera acidiphila DSM 18658, Singulisphaera acidiphila MOB10, Singulisphaera acidiphila str. DSM 18658, Singulisphaera acidiphila strain DSM 18658
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.