STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AGA25478.1PFAM: Protein of unknown function (DUF790). (414 aa)    
Predicted Functional Partners:
AGA25477.1
DNA/RNA helicase, superfamily II; PFAM: Helicase conserved C-terminal domain; Type III restriction enzyme, res subunit.
 
 
 
 0.988
AGA30429.1
DNA/RNA helicase, superfamily II; PFAM: Helicase conserved C-terminal domain; Type III restriction enzyme, res subunit; TIGRFAM: DNA repair helicase rad25.
 
 
 
 0.914
AGA25476.1
PFAM: Protein of unknown function (DUF820).
 
     0.781
AGA28849.1
PFAM: HNH endonuclease; manually curated.
  
     0.711
AGA31592.1
PFAM: Protein of unknown function (DUF820).
  
     0.698
AGA27727.1
Hypothetical protein.
  
     0.693
AGA28589.1
Hypothetical protein.
  
     0.682
AGA29541.1
HEAT repeat-containing protein; PFAM: PBS lyase HEAT-like repeat; HEAT repeat.
  
     0.649
AGA24574.1
PFAM: Protein of unknown function (DUF820).
  
     0.630
AGA26124.1
Hypothetical protein.
  
     0.627
Your Current Organism:
Singulisphaera acidiphila
NCBI taxonomy Id: 886293
Other names: S. acidiphila DSM 18658, Singulisphaera acidiphila DSM 18658, Singulisphaera acidiphila MOB10, Singulisphaera acidiphila str. DSM 18658, Singulisphaera acidiphila strain DSM 18658
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.