Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of proteins in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| AGA25222.1 | AGA27325.1 | Sinac_0814 | Sinac_3042 | ADP-ribose pyrophosphatase; PFAM: NUDIX domain. | ADP-ribose pyrophosphatase; PFAM: NUDIX domain; Belongs to the Nudix hydrolase family. | 0.416 |
| AGA25222.1 | AGA29172.1 | Sinac_0814 | Sinac_5018 | ADP-ribose pyrophosphatase; PFAM: NUDIX domain. | NTP pyrophosphohydrolase; PFAM: NUDIX domain; Belongs to the Nudix hydrolase family. | 0.958 |
| AGA25222.1 | rnr | Sinac_0814 | Sinac_1130 | ADP-ribose pyrophosphatase; PFAM: NUDIX domain. | Ribonuclease R; 3'-5' exoribonuclease that releases 5'-nucleoside monophosphates and is involved in maturation of structured RNAs. | 0.764 |
| AGA25222.1 | rph | Sinac_0814 | Sinac_2648 | ADP-ribose pyrophosphatase; PFAM: NUDIX domain. | Ribonuclease PH; Phosphorolytic 3'-5' exoribonuclease that plays an important role in tRNA 3'-end maturation. Removes nucleotide residues following the 3'-CCA terminus of tRNAs; can also add nucleotides to the ends of RNA molecules by using nucleoside diphosphates as substrates, but this may not be physiologically important. Probably plays a role in initiation of 16S rRNA degradation (leading to ribosome degradation) during starvation. | 0.684 |
| AGA25587.1 | rnr | Sinac_1196 | Sinac_1130 | PFAM: HRDC domain; 3'-5' exonuclease; TIGRFAM: ribonuclease D. | Ribonuclease R; 3'-5' exoribonuclease that releases 5'-nucleoside monophosphates and is involved in maturation of structured RNAs. | 0.905 |
| AGA25587.1 | rph | Sinac_1196 | Sinac_2648 | PFAM: HRDC domain; 3'-5' exonuclease; TIGRFAM: ribonuclease D. | Ribonuclease PH; Phosphorolytic 3'-5' exoribonuclease that plays an important role in tRNA 3'-end maturation. Removes nucleotide residues following the 3'-CCA terminus of tRNAs; can also add nucleotides to the ends of RNA molecules by using nucleoside diphosphates as substrates, but this may not be physiologically important. Probably plays a role in initiation of 16S rRNA degradation (leading to ribosome degradation) during starvation. | 0.971 |
| AGA25587.1 | rplV | Sinac_1196 | Sinac_0480 | PFAM: HRDC domain; 3'-5' exonuclease; TIGRFAM: ribonuclease D. | Ribosomal protein L22, bacterial type; The globular domain of the protein is located near the polypeptide exit tunnel on the outside of the subunit, while an extended beta-hairpin is found that lines the wall of the exit tunnel in the center of the 70S ribosome. | 0.764 |
| AGA25587.1 | rplX | Sinac_1196 | Sinac_0474 | PFAM: HRDC domain; 3'-5' exonuclease; TIGRFAM: ribonuclease D. | Ribosomal protein L24, bacterial/organelle; One of the proteins that surrounds the polypeptide exit tunnel on the outside of the subunit. | 0.883 |
| AGA27325.1 | AGA25222.1 | Sinac_3042 | Sinac_0814 | ADP-ribose pyrophosphatase; PFAM: NUDIX domain; Belongs to the Nudix hydrolase family. | ADP-ribose pyrophosphatase; PFAM: NUDIX domain. | 0.416 |
| AGA27325.1 | rnr | Sinac_3042 | Sinac_1130 | ADP-ribose pyrophosphatase; PFAM: NUDIX domain; Belongs to the Nudix hydrolase family. | Ribonuclease R; 3'-5' exoribonuclease that releases 5'-nucleoside monophosphates and is involved in maturation of structured RNAs. | 0.764 |
| AGA27325.1 | rph | Sinac_3042 | Sinac_2648 | ADP-ribose pyrophosphatase; PFAM: NUDIX domain; Belongs to the Nudix hydrolase family. | Ribonuclease PH; Phosphorolytic 3'-5' exoribonuclease that plays an important role in tRNA 3'-end maturation. Removes nucleotide residues following the 3'-CCA terminus of tRNAs; can also add nucleotides to the ends of RNA molecules by using nucleoside diphosphates as substrates, but this may not be physiologically important. Probably plays a role in initiation of 16S rRNA degradation (leading to ribosome degradation) during starvation. | 0.684 |
| AGA28979.1 | rnr | Sinac_4819 | Sinac_1130 | NTP pyrophosphohydrolase; PFAM: NUDIX domain; Belongs to the Nudix hydrolase family. | Ribonuclease R; 3'-5' exoribonuclease that releases 5'-nucleoside monophosphates and is involved in maturation of structured RNAs. | 0.764 |
| AGA28979.1 | rph | Sinac_4819 | Sinac_2648 | NTP pyrophosphohydrolase; PFAM: NUDIX domain; Belongs to the Nudix hydrolase family. | Ribonuclease PH; Phosphorolytic 3'-5' exoribonuclease that plays an important role in tRNA 3'-end maturation. Removes nucleotide residues following the 3'-CCA terminus of tRNAs; can also add nucleotides to the ends of RNA molecules by using nucleoside diphosphates as substrates, but this may not be physiologically important. Probably plays a role in initiation of 16S rRNA degradation (leading to ribosome degradation) during starvation. | 0.684 |
| AGA29172.1 | AGA25222.1 | Sinac_5018 | Sinac_0814 | NTP pyrophosphohydrolase; PFAM: NUDIX domain; Belongs to the Nudix hydrolase family. | ADP-ribose pyrophosphatase; PFAM: NUDIX domain. | 0.958 |
| AGA29172.1 | rnr | Sinac_5018 | Sinac_1130 | NTP pyrophosphohydrolase; PFAM: NUDIX domain; Belongs to the Nudix hydrolase family. | Ribonuclease R; 3'-5' exoribonuclease that releases 5'-nucleoside monophosphates and is involved in maturation of structured RNAs. | 0.764 |
| AGA29172.1 | rph | Sinac_5018 | Sinac_2648 | NTP pyrophosphohydrolase; PFAM: NUDIX domain; Belongs to the Nudix hydrolase family. | Ribonuclease PH; Phosphorolytic 3'-5' exoribonuclease that plays an important role in tRNA 3'-end maturation. Removes nucleotide residues following the 3'-CCA terminus of tRNAs; can also add nucleotides to the ends of RNA molecules by using nucleoside diphosphates as substrates, but this may not be physiologically important. Probably plays a role in initiation of 16S rRNA degradation (leading to ribosome degradation) during starvation. | 0.684 |
| AGA29751.1 | rnr | Sinac_5618 | Sinac_1130 | PFAM: SpoU rRNA Methylase family. | Ribonuclease R; 3'-5' exoribonuclease that releases 5'-nucleoside monophosphates and is involved in maturation of structured RNAs. | 0.726 |
| AGA29751.1 | rplV | Sinac_5618 | Sinac_0480 | PFAM: SpoU rRNA Methylase family. | Ribosomal protein L22, bacterial type; The globular domain of the protein is located near the polypeptide exit tunnel on the outside of the subunit, while an extended beta-hairpin is found that lines the wall of the exit tunnel in the center of the 70S ribosome. | 0.434 |
| AGA29751.1 | rplX | Sinac_5618 | Sinac_0474 | PFAM: SpoU rRNA Methylase family. | Ribosomal protein L24, bacterial/organelle; One of the proteins that surrounds the polypeptide exit tunnel on the outside of the subunit. | 0.877 |
| AGA29751.1 | rsmG | Sinac_5618 | Sinac_3361 | PFAM: SpoU rRNA Methylase family. | 16S rRNA (guanine(527)-N(7))-methyltransferase GidB; Specifically methylates the N7 position of a guanine in 16S rRNA; Belongs to the methyltransferase superfamily. RNA methyltransferase RsmG family. | 0.510 |
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