STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AGA25649.1Cysteine desulfurase-like protein, SufS subfamily; PFAM: Fe-S metabolism associated domain; Aminotransferase class-V; TIGRFAM: cysteine desulfurases, SufSfamily; Belongs to the class-V pyridoxal-phosphate-dependent aminotransferase family. (599 aa)    
Predicted Functional Partners:
AGA25617.1
Iron-sulfur cluster biosynthesis protein, NifU-like protein; PFAM: NifU-like N terminal domain.
 
 
 0.985
AGA29434.1
PFAM: ABC transporter; TIGRFAM: FeS assembly ATPase SufC.
 
 
 0.985
AGA29435.1
FeS assembly protein SufB; PFAM: Uncharacterized protein family (UPF0051); TIGRFAM: FeS assembly protein SufB.
 
 
 0.974
AGA29436.1
FeS assembly protein SufD; PFAM: Uncharacterized protein family (UPF0051); TIGRFAM: FeS assembly protein SufD.
 
 
 0.974
AGA30492.1
Selenocysteine lyase; PFAM: Aminotransferase class-V.
 
0.972
AGA28256.1
Thioredoxin reductase; PFAM: Pyridine nucleotide-disulphide oxidoreductase; Cyclic nucleotide-binding domain.
  
 
 0.921
AGA29549.1
Thioredoxin reductase; PFAM: Pyridine nucleotide-disulphide oxidoreductase; TIGRFAM: thioredoxin-disulfide reductase.
  
 
  0.903
AGA24536.1
Cystathionine beta-lyase/cystathionine gamma-synthase; PFAM: Cys/Met metabolism PLP-dependent enzyme.
     
 0.900
AGA29440.1
Putative metal-sulfur cluster biosynthetic enzyme; PFAM: Domain of unknown function DUF59.
 
  
 0.796
AGA25650.1
Putative amidohydrolase; PFAM: Carbon-nitrogen hydrolase.
       0.773
Your Current Organism:
Singulisphaera acidiphila
NCBI taxonomy Id: 886293
Other names: S. acidiphila DSM 18658, Singulisphaera acidiphila DSM 18658, Singulisphaera acidiphila MOB10, Singulisphaera acidiphila str. DSM 18658, Singulisphaera acidiphila strain DSM 18658
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.