STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AGA25679.1PFAM: Protein of unknown function (DUF1597). (453 aa)    
Predicted Functional Partners:
AGA26680.1
Hypothetical protein.
  
     0.732
AGA30270.1
Hypothetical protein.
  
     0.660
AGA27871.1
Hypothetical protein.
  
     0.642
AGA25198.1
Putative metal-dependent membrane protease; PFAM: CAAX amino terminal protease family.
  
     0.632
AGA29111.1
PFAM: Methylene-tetrahydromethanopterin dehydrogenase, N-terminal.
  
     0.564
AGA27254.1
PFAM: Radical SAM superfamily; Domain of unknown function (DUF3463); TIGRFAM: hopanoid biosynthesis associated radical SAM protein HpnH.
  
     0.552
AGA27255.1
Squalene-hopene cyclase; PFAM: Prenyltransferase and squalene oxidase repeat; TIGRFAM: squalene/oxidosqualene cyclases; squalene-hopene cyclase.
  
     0.545
AGA31217.1
Squalene-hopene cyclase; PFAM: Prenyltransferase and squalene oxidase repeat; TIGRFAM: squalene/oxidosqualene cyclases; squalene-hopene cyclase.
  
     0.470
AGA25680.1
Hypothetical protein.
       0.436
AGA27101.1
Hypothetical protein.
  
     0.412
Your Current Organism:
Singulisphaera acidiphila
NCBI taxonomy Id: 886293
Other names: S. acidiphila DSM 18658, Singulisphaera acidiphila DSM 18658, Singulisphaera acidiphila MOB10, Singulisphaera acidiphila str. DSM 18658, Singulisphaera acidiphila strain DSM 18658
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.