STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AGA25792.1Putative LmbE-like protein; PFAM: GlcNAc-PI de-N-acetylase. (248 aa)    
Predicted Functional Partners:
AGA25791.1
PFAM: Protein phosphatase 2C.
       0.578
AGA27539.1
TIGRFAM: UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase.
  
     0.568
AGA25793.1
Precorrin-6Y C5,15-methyltransferase (decarboxylating); PFAM: Tetrapyrrole (Corrin/Porphyrin) Methylases; TIGRFAM: methyltransferase, FkbM family; precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit; precorrin-6y C5,15-methyltransferase (decarboxylating), CbiE subunit.
       0.509
AGA30934.1
PFAM: ATP synthase subunit C; TIGRFAM: ATP synthase, F0 subunit c.
  
     0.487
AGA27338.1
PFAM: von Willebrand factor type A domain.
  
     0.483
AGA30524.1
Parvulin-like peptidyl-prolyl isomerase; PFAM: PPIC-type PPIASE domain.
  
     0.459
AGA29059.1
Hypothetical protein.
  
  
 0.449
AGA30757.1
PFAM: Protein of unknown function (DUF1571).
  
     0.440
AGA27337.1
Mg-chelatase subunit ChlI.
  
     0.410
Your Current Organism:
Singulisphaera acidiphila
NCBI taxonomy Id: 886293
Other names: S. acidiphila DSM 18658, Singulisphaera acidiphila DSM 18658, Singulisphaera acidiphila MOB10, Singulisphaera acidiphila str. DSM 18658, Singulisphaera acidiphila strain DSM 18658
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.