Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of proteins in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| AGA25386.1 | AGA29763.1 | Sinac_0983 | Sinac_5630 | PFAM: Translation initiation factor IF-3, C-terminal domain; Translation initiation factor IF-3, N-terminal domain; TIGRFAM: translation initiation factor IF-3; manually curated; Belongs to the IF-3 family. | DNA-directed RNA polymerase, alpha subunit/40 kD subunit; PFAM: Tetratricopeptide repeat; Bacterial RNA polymerase, alpha chain C terminal domain. | 0.824 |
| AGA25386.1 | nusA | Sinac_0983 | Sinac_5506 | PFAM: Translation initiation factor IF-3, C-terminal domain; Translation initiation factor IF-3, N-terminal domain; TIGRFAM: translation initiation factor IF-3; manually curated; Belongs to the IF-3 family. | Transcription termination factor NusA; Participates in both transcription termination and antitermination. | 0.457 |
| AGA25386.1 | rpoA | Sinac_0983 | Sinac_0460 | PFAM: Translation initiation factor IF-3, C-terminal domain; Translation initiation factor IF-3, N-terminal domain; TIGRFAM: translation initiation factor IF-3; manually curated; Belongs to the IF-3 family. | DNA-directed RNA polymerase, alpha subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.842 |
| AGA25386.1 | rpoB | Sinac_0983 | Sinac_0501 | PFAM: Translation initiation factor IF-3, C-terminal domain; Translation initiation factor IF-3, N-terminal domain; TIGRFAM: translation initiation factor IF-3; manually curated; Belongs to the IF-3 family. | DNA-directed RNA polymerase, beta subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.742 |
| AGA25386.1 | sigA | Sinac_0983 | Sinac_1564 | PFAM: Translation initiation factor IF-3, C-terminal domain; Translation initiation factor IF-3, N-terminal domain; TIGRFAM: translation initiation factor IF-3; manually curated; Belongs to the IF-3 family. | RNA polymerase sigma factor, sigma-70 family; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is the primary sigma factor during exponential growth. | 0.561 |
| AGA25944.1 | dnaG | Sinac_1565 | Sinac_1563 | Zn-ribbon protein, possibly nucleic acid-binding protein; PFAM: Putative zinc ribbon domain. | DNA primase, catalytic core; RNA polymerase that catalyzes the synthesis of short RNA molecules used as primers for DNA polymerase during DNA replication. | 0.500 |
| AGA25944.1 | sigA | Sinac_1565 | Sinac_1564 | Zn-ribbon protein, possibly nucleic acid-binding protein; PFAM: Putative zinc ribbon domain. | RNA polymerase sigma factor, sigma-70 family; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is the primary sigma factor during exponential growth. | 0.587 |
| AGA26990.1 | sigA | Sinac_2692 | Sinac_1564 | PFAM: Metal binding domain of Ada; 6-O-methylguanine DNA methyltransferase, DNA binding domain; TIGRFAM: O-6-methylguanine DNA methyltransferase. | RNA polymerase sigma factor, sigma-70 family; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is the primary sigma factor during exponential growth. | 0.838 |
| AGA29763.1 | AGA25386.1 | Sinac_5630 | Sinac_0983 | DNA-directed RNA polymerase, alpha subunit/40 kD subunit; PFAM: Tetratricopeptide repeat; Bacterial RNA polymerase, alpha chain C terminal domain. | PFAM: Translation initiation factor IF-3, C-terminal domain; Translation initiation factor IF-3, N-terminal domain; TIGRFAM: translation initiation factor IF-3; manually curated; Belongs to the IF-3 family. | 0.824 |
| AGA29763.1 | nusA | Sinac_5630 | Sinac_5506 | DNA-directed RNA polymerase, alpha subunit/40 kD subunit; PFAM: Tetratricopeptide repeat; Bacterial RNA polymerase, alpha chain C terminal domain. | Transcription termination factor NusA; Participates in both transcription termination and antitermination. | 0.983 |
| AGA29763.1 | rpoA | Sinac_5630 | Sinac_0460 | DNA-directed RNA polymerase, alpha subunit/40 kD subunit; PFAM: Tetratricopeptide repeat; Bacterial RNA polymerase, alpha chain C terminal domain. | DNA-directed RNA polymerase, alpha subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.912 |
| AGA29763.1 | rpoB | Sinac_5630 | Sinac_0501 | DNA-directed RNA polymerase, alpha subunit/40 kD subunit; PFAM: Tetratricopeptide repeat; Bacterial RNA polymerase, alpha chain C terminal domain. | DNA-directed RNA polymerase, beta subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.993 |
| AGA29763.1 | rpoC | Sinac_5630 | Sinac_0499 | DNA-directed RNA polymerase, alpha subunit/40 kD subunit; PFAM: Tetratricopeptide repeat; Bacterial RNA polymerase, alpha chain C terminal domain. | DNA-directed RNA polymerase, beta'' subunit, predominant form; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.994 |
| AGA29763.1 | rpoZ | Sinac_5630 | Sinac_1493 | DNA-directed RNA polymerase, alpha subunit/40 kD subunit; PFAM: Tetratricopeptide repeat; Bacterial RNA polymerase, alpha chain C terminal domain. | RNA polymerase Rpb6; Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits. | 0.998 |
| AGA29763.1 | sigA | Sinac_5630 | Sinac_1564 | DNA-directed RNA polymerase, alpha subunit/40 kD subunit; PFAM: Tetratricopeptide repeat; Bacterial RNA polymerase, alpha chain C terminal domain. | RNA polymerase sigma factor, sigma-70 family; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is the primary sigma factor during exponential growth. | 0.714 |
| dnaG | AGA25944.1 | Sinac_1563 | Sinac_1565 | DNA primase, catalytic core; RNA polymerase that catalyzes the synthesis of short RNA molecules used as primers for DNA polymerase during DNA replication. | Zn-ribbon protein, possibly nucleic acid-binding protein; PFAM: Putative zinc ribbon domain. | 0.500 |
| dnaG | nusA | Sinac_1563 | Sinac_5506 | DNA primase, catalytic core; RNA polymerase that catalyzes the synthesis of short RNA molecules used as primers for DNA polymerase during DNA replication. | Transcription termination factor NusA; Participates in both transcription termination and antitermination. | 0.530 |
| dnaG | rpoA | Sinac_1563 | Sinac_0460 | DNA primase, catalytic core; RNA polymerase that catalyzes the synthesis of short RNA molecules used as primers for DNA polymerase during DNA replication. | DNA-directed RNA polymerase, alpha subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.466 |
| dnaG | rpoB | Sinac_1563 | Sinac_0501 | DNA primase, catalytic core; RNA polymerase that catalyzes the synthesis of short RNA molecules used as primers for DNA polymerase during DNA replication. | DNA-directed RNA polymerase, beta subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.473 |
| dnaG | rpoC | Sinac_1563 | Sinac_0499 | DNA primase, catalytic core; RNA polymerase that catalyzes the synthesis of short RNA molecules used as primers for DNA polymerase during DNA replication. | DNA-directed RNA polymerase, beta'' subunit, predominant form; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.525 |
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