STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AGA25981.1TIGR01777 family protein; PFAM: NAD dependent epimerase/dehydratase family; Domain of unknown function (DUF1731); TIGRFAM: TIGR01777 family protein. (336 aa)    
Predicted Functional Partners:
AGA29228.1
Hypothetical protein; PFAM: Polyketide cyclase / dehydrase and lipid transport.
     0.925
AGA24774.1
PFAM: DeoC/LacD family aldolase.
   
    0.678
AGA31438.1
Hypothetical protein; PFAM: 3-demethylubiquinone-9 3-methyltransferase.
  
    0.665
AGA30077.1
Putative divalent heavy-metal cations transporter; PFAM: ZIP Zinc transporter.
  
    0.625
AGA29322.1
Mn-dependent transcriptional regulator; PFAM: FeoA domain; Iron dependent repressor, metal binding and dimerisation domain; Iron dependent repressor, N-terminal DNA binding domain.
   
    0.579
AGA25395.1
Hypothetical protein; PFAM: CsbD-like; Belongs to the UPF0337 (CsbD) family.
   
    0.548
AGA26346.1
Hypothetical protein; PFAM: CsbD-like; Belongs to the UPF0337 (CsbD) family.
   
    0.548
AGA25982.1
PLP-dependent enzyme, histidinol-phosphate/aromatic aminotransferase or cobyric acid decarboxylase; PFAM: Aminotransferase class I and II.
       0.541
AGA25980.1
Putative hydrolase or acyltransferase of alpha/beta superfamily.
 
     0.472
cobQ
Cobyric acid synthase CobQ; Catalyzes amidations at positions B, D, E, and G on adenosylcobyrinic A,C-diamide. NH(2) groups are provided by glutamine, and one molecule of ATP is hydrogenolyzed for each amidation. Belongs to the CobB/CobQ family. CobQ subfamily.
       0.465
Your Current Organism:
Singulisphaera acidiphila
NCBI taxonomy Id: 886293
Other names: S. acidiphila DSM 18658, Singulisphaera acidiphila DSM 18658, Singulisphaera acidiphila MOB10, Singulisphaera acidiphila str. DSM 18658, Singulisphaera acidiphila strain DSM 18658
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.