STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AGA26082.1PFAM: Sigma-70 region 2; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; Belongs to the sigma-70 factor family. ECF subfamily. (246 aa)    
Predicted Functional Partners:
AGA31304.1
Hypothetical protein.
  
     0.727
AGA27843.1
Hypothetical protein.
  
     0.718
AGA26115.1
Hypothetical protein.
  
     0.717
AGA31574.1
Membrane protein involved in the export of O-antigen and teichoic acid; PFAM: MatE.
  
     0.716
AGA28203.1
Hypothetical protein.
  
     0.715
AGA25346.1
Hypothetical protein.
  
 
   0.714
AGA29223.1
Hypothetical protein.
  
    0.713
AGA29722.1
Hypothetical protein.
  
     0.713
AGA25824.1
Hypothetical protein.
  
     0.712
AGA31377.1
Hypothetical protein.
  
     0.712
Your Current Organism:
Singulisphaera acidiphila
NCBI taxonomy Id: 886293
Other names: S. acidiphila DSM 18658, Singulisphaera acidiphila DSM 18658, Singulisphaera acidiphila MOB10, Singulisphaera acidiphila str. DSM 18658, Singulisphaera acidiphila strain DSM 18658
Server load: medium (54%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.