STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AGA26118.1DNA-binding domain-containing protein, AraC-type. (325 aa)    
Predicted Functional Partners:
AGA26117.1
Putative membrane protein; PFAM: Protein of unknown function, DUF417.
 
     0.881
AGA27739.1
Hypothetical protein.
  
     0.648
AGA27741.1
PFAM: Aerotolerance regulator N-terminal; TIGRFAM: N-terminal double-transmembrane domain.
  
     0.621
AGA31027.1
Putative heme-binding domain-containing protein; PFAM: Cytochrome c; Copper binding proteins, plastocyanin/azurin family; Xylose isomerase-like TIM barrel; TIGRFAM: putative heme-binding domain, Pirellula/Verrucomicrobium type.
  
     0.603
AGA27740.1
Hypothetical protein.
  
     0.538
AGA27736.1
Hypothetical protein.
  
     0.506
AGA29021.1
Putative TIM-barrel fold metal-dependent hydrolase; PFAM: Amidohydrolase; COG3618.
  
     0.502
AGA24526.1
PFAM: Protein of unknown function (DUF1557).
  
     0.426
AGA27303.1
Hypothetical protein.
  
     0.423
AGA27735.1
Thiol-disulfide isomerase-like thioredoxin; PFAM: AhpC/TSA family.
  
     0.417
Your Current Organism:
Singulisphaera acidiphila
NCBI taxonomy Id: 886293
Other names: S. acidiphila DSM 18658, Singulisphaera acidiphila DSM 18658, Singulisphaera acidiphila MOB10, Singulisphaera acidiphila str. DSM 18658, Singulisphaera acidiphila strain DSM 18658
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.