STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AGA26119.1Putative metal-dependent hydrolase with TIM-barrel fold; PFAM: TatD related DNase. (281 aa)    
Predicted Functional Partners:
AGA26122.1
4-hydroxybenzoate polyprenyltransferase-like prenyltransferase; PFAM: UbiA prenyltransferase family.
 
   
 0.804
AGA29338.1
Putative AP superfamily protein; PFAM: Type I phosphodiesterase / nucleotide pyrophosphatase.
 
   
 0.799
AGA25347.1
PFAM: 3-dehydroquinate synthase.
 
     0.756
AGA26629.1
PFAM: Cytochrome c; TIGRFAM: putative heme-binding domain, Pirellula/Verrucomicrobium type.
 
     0.745
AGA29307.1
Glucose/sorbosone dehydrogenase.
 
     0.735
AGA28813.1
PFAM: Cytochrome c; TIGRFAM: putative heme-binding domain, Pirellula/Verrucomicrobium type.
 
     0.724
AGA29916.1
Glucose/sorbosone dehydrogenase.
 
     0.723
AGA31012.1
PFAM: Cytochrome c; TIGRFAM: putative heme-binding domain, Pirellula/Verrucomicrobium type.
 
     0.716
AGA27057.1
Putative membrane-bound dehydrogenase; PFAM: Cytochrome c; Trehalose utilisation; TIGRFAM: putative membrane-bound dehydrogenase domain; putative heme-binding domain, Pirellula/Verrucomicrobium type.
 
     0.712
AGA27104.1
Putative membrane-bound dehydrogenase; PFAM: Cytochrome c; Trehalose utilisation; TIGRFAM: putative membrane-bound dehydrogenase domain; putative heme-binding domain, Pirellula/Verrucomicrobium type.
 
     0.705
Your Current Organism:
Singulisphaera acidiphila
NCBI taxonomy Id: 886293
Other names: S. acidiphila DSM 18658, Singulisphaera acidiphila DSM 18658, Singulisphaera acidiphila MOB10, Singulisphaera acidiphila str. DSM 18658, Singulisphaera acidiphila strain DSM 18658
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.