STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AGA26199.1Hypothetical protein. (282 aa)    
Predicted Functional Partners:
AGA30944.1
PFAM: Cytochrome c.
  
     0.749
AGA24481.1
PFAM: Multicopper oxidase.
   
 
 0.729
AGA30448.1
PFAM: Cytochrome c; PA14 domain.
  
     0.672
AGA30752.1
Rieske Fe-S protein; PFAM: Rieske [2Fe-2S] domain.
 
  
 0.667
AGA26197.1
PFAM: Cytochrome c.
 
     0.660
AGA26194.1
Rieske Fe-S protein; PFAM: Rieske [2Fe-2S] domain.
 
  
 0.638
AGA30947.1
PFAM: Cytochrome oxidase assembly protein.
 
     0.625
AGA26196.1
Hypothetical protein.
 
   
 0.614
AGA30767.1
PFAM: Sigma-70, region 4; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; RNA polymerase sigma-70 factor, Planctomycetaceae-specific subfamily 1.
  
     0.608
AGA25212.1
5'-nucleotidase/2',3'-cyclic phosphodiesterase-like hydrolase; PFAM: Doubled CXXCH motif (Paired_CXXCH_1).
  
     0.592
Your Current Organism:
Singulisphaera acidiphila
NCBI taxonomy Id: 886293
Other names: S. acidiphila DSM 18658, Singulisphaera acidiphila DSM 18658, Singulisphaera acidiphila MOB10, Singulisphaera acidiphila str. DSM 18658, Singulisphaera acidiphila strain DSM 18658
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.