STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AGA26420.1ABC-type antimicrobial peptide transport system, ATPase component; PFAM: ABC transporter. (241 aa)    
Predicted Functional Partners:
AGA26419.1
ABC-type antimicrobial peptide transport system, permease component; PFAM: Predicted permease.
 
   0.875
AGA26421.1
Multidrug resistance efflux pump; PFAM: HlyD family secretion protein.
  
   0.797
AGA28961.1
ABC-type antimicrobial peptide transport system, permease component; PFAM: Predicted permease.
   0.795
AGA29875.1
ABC-type antimicrobial peptide transport system, permease component; PFAM: Predicted permease.
   0.795
AGA28590.1
ABC-type antimicrobial peptide transport system, permease component; PFAM: Predicted permease.
   0.794
AGA29708.1
ABC-type transport system, involved in lipoprotein release, permease component; PFAM: Predicted permease.
 
 
 0.690
AGA27658.1
ABC-type transport system, involved in lipoprotein release, permease component; PFAM: Predicted permease.
   0.665
AGA25095.1
ABC-type transport system, involved in lipoprotein release, permease component; PFAM: Predicted permease.
 
 
 0.643
AGA25939.1
ABC-type multidrug transport system, ATPase and permease component; PFAM: ABC transporter.
 
     0.611
AGA29176.1
ABC-type transport system, involved in lipoprotein release, permease component; PFAM: Predicted permease.
 
 
 0.569
Your Current Organism:
Singulisphaera acidiphila
NCBI taxonomy Id: 886293
Other names: S. acidiphila DSM 18658, Singulisphaera acidiphila DSM 18658, Singulisphaera acidiphila MOB10, Singulisphaera acidiphila str. DSM 18658, Singulisphaera acidiphila strain DSM 18658
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.