STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AGA26421.1Multidrug resistance efflux pump; PFAM: HlyD family secretion protein. (354 aa)    
Predicted Functional Partners:
AGA26419.1
ABC-type antimicrobial peptide transport system, permease component; PFAM: Predicted permease.
 
    0.914
AGA26420.1
ABC-type antimicrobial peptide transport system, ATPase component; PFAM: ABC transporter.
  
   0.797
macB
ABC-type antimicrobial peptide transport system, ATPase component; Non-canonical ABC transporter that contains transmembrane domains (TMD), which form a pore in the inner membrane, and an ATP- binding domain (NBD), which is responsible for energy generation. Confers resistance against macrolides.
  
 
 0.552
AGA24634.1
Hypothetical protein.
  
     0.524
AGA26535.1
Arabinose efflux permease family protein; PFAM: Major Facilitator Superfamily.
  
   0.504
AGA27314.1
ABC-type antimicrobial peptide transport system, permease component; PFAM: Predicted permease.
 
    0.502
AGA26867.1
PFAM: Outer membrane efflux protein.
  
   0.491
AGA29075.1
DevC protein; PFAM: Predicted permease; TIGRFAM: DevC protein.
 
    0.470
AGA28038.1
ABC-type bacteriocin/lantibiotic exporter with N-terminal double-glycine peptidase domain; PFAM: Peptidase C39 family.
  
 
 0.457
AGA29074.1
ABC-type antimicrobial peptide transport system, permease component; PFAM: Predicted permease; TIGRFAM: DevC protein.
 
    0.457
Your Current Organism:
Singulisphaera acidiphila
NCBI taxonomy Id: 886293
Other names: S. acidiphila DSM 18658, Singulisphaera acidiphila DSM 18658, Singulisphaera acidiphila MOB10, Singulisphaera acidiphila str. DSM 18658, Singulisphaera acidiphila strain DSM 18658
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.