STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AGA26433.1Protocatechuate 3,4-dioxygenase beta subunit; PFAM: Dioxygenase. (234 aa)    
Predicted Functional Partners:
AGA28221.1
Protocatechuate 3,4-dioxygenase beta subunit; PFAM: Dioxygenase.
  
  
  0.970
AGA29575.1
Protocatechuate 3,4-dioxygenase beta subunit; PFAM: Dioxygenase.
  
  
 
0.902
AGA26432.1
Hypothetical protein.
 
     0.691
AGA29866.1
PFAM: Cytochrome c; TIGRFAM: putative membrane-bound dehydrogenase domain; putative heme-binding domain, Pirellula/Verrucomicrobium type.
  
     0.549
AGA25995.1
PFAM: Sigma-70 region 2; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; Belongs to the sigma-70 factor family. ECF subfamily.
  
     0.523
AGA24869.1
Putative membrane-bound dehydrogenase; PFAM: Cytochrome c; Domain of Unknown Function (DUF1080); TIGRFAM: putative membrane-bound dehydrogenase domain; putative heme-binding domain, Pirellula/Verrucomicrobium type.
  
     0.449
AGA29017.1
Hypothetical protein.
  
     0.432
AGA26434.1
Hypothetical protein.
       0.429
AGA28771.1
PFAM: Domain of Unknown Function (DUF1080).
  
     0.424
AGA31066.1
Putative membrane-bound dehydrogenase; PFAM: F5/8 type C domain; Cytochrome c; GDSL-like Lipase/Acylhydrolase; Copper binding proteins, plastocyanin/azurin family; TIGRFAM: putative membrane-bound dehydrogenase domain; putative heme-binding domain, Pirellula/Verrucomicrobium type.
  
     0.421
Your Current Organism:
Singulisphaera acidiphila
NCBI taxonomy Id: 886293
Other names: S. acidiphila DSM 18658, Singulisphaera acidiphila DSM 18658, Singulisphaera acidiphila MOB10, Singulisphaera acidiphila str. DSM 18658, Singulisphaera acidiphila strain DSM 18658
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.