STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AGA26468.1PFAM: Protein of unknown function DUF58. (448 aa)    
Predicted Functional Partners:
AGA26467.1
Transglutaminase-like enzyme, predicted cysteine protease; PFAM: Transglutaminase-like superfamily.
 
    0.952
AGA26466.1
PFAM: ATPase family associated with various cellular activities (AAA).
 
    0.857
AGA30011.1
Transglutaminase-like enzyme, predicted cysteine protease; PFAM: Transglutaminase-like superfamily; Domain of unknown function (DUF3488).
 
    0.663
AGA30010.1
PFAM: Protein of unknown function DUF58.
  
     0.600
AGA26469.1
PFAM: Sigma-70, region 4; Sigma-70 region 2; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; Belongs to the sigma-70 factor family. ECF subfamily.
       0.584
AGA28693.1
PFAM: Predicted permease.
 
    0.584
AGA26884.1
Hypothetical protein.
  
     0.507
AGA24652.1
FHA domain-containing protein; PFAM: FHA domain.
  
     0.473
AGA30331.1
Hypothetical protein.
  
     0.453
AGA29272.1
Type II secretory pathway, component PulD; PFAM: Bacterial type II and III secretion system protein; Belongs to the bacterial secretin family.
  
     0.408
Your Current Organism:
Singulisphaera acidiphila
NCBI taxonomy Id: 886293
Other names: S. acidiphila DSM 18658, Singulisphaera acidiphila DSM 18658, Singulisphaera acidiphila MOB10, Singulisphaera acidiphila str. DSM 18658, Singulisphaera acidiphila strain DSM 18658
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.