STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AGA26745.1alpha-L-rhamnosidase family protein; PFAM: Alpha-L-rhamnosidase N-terminal domain. (726 aa)    
Predicted Functional Partners:
AGA24778.1
Hypothetical protein.
  
    0.732
AGA28616.1
Negative regulator of beta-lactamase expression; PFAM: N-acetylmuramoyl-L-alanine amidase.
  
     0.707
AGA31408.1
Hypothetical protein.
 
     0.593
AGA30382.1
Hypothetical protein.
  
     0.542
AGA30424.1
Sugar phosphate isomerase/epimerase; PFAM: TAT (twin-arginine translocation) pathway signal sequence; Xylose isomerase-like TIM barrel; TIGRFAM: Tat (twin-arginine translocation) pathway signal sequence.
  
     0.542
AGA29942.1
PFAM: Acetyl xylan esterase (AXE1).
  
     0.533
AGA29286.1
Lactoylglutathione lyase-like lyase.
  
     0.500
AGA25757.1
PFAM: PhoPQ-activated pathogenicity-related protein.
  
     0.491
AGA25802.1
Thioredoxin domain protein; PFAM: Protein of unknown function, DUF255.
   
   0.490
AGA26862.1
Thioredoxin domain protein; PFAM: Protein of unknown function, DUF255.
   
   0.490
Your Current Organism:
Singulisphaera acidiphila
NCBI taxonomy Id: 886293
Other names: S. acidiphila DSM 18658, Singulisphaera acidiphila DSM 18658, Singulisphaera acidiphila MOB10, Singulisphaera acidiphila str. DSM 18658, Singulisphaera acidiphila strain DSM 18658
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.