STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AGA26846.1PFAM: Bacterial regulatory proteins, tetR family. (206 aa)    
Predicted Functional Partners:
AGA27654.1
PFAM: Sigma-70, region 4; Sigma-70 region 2; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; RNA polymerase sigma-70 factor, TIGR02957 family.
  
     0.482
AGA25008.1
PFAM: Bacterial regulatory proteins, tetR family.
  
     0.478
AGA28327.1
Transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain; PFAM: DJ-1/PfpI family.
  
     0.472
AGA30972.1
PFAM: Bacterial regulatory proteins, tetR family.
  
     0.466
AGA26850.1
Hypothetical protein; PFAM: Carboxymuconolactone decarboxylase family; TIGRFAM: alkylhydroperoxidase AhpD family core domain.
 
     0.439
AGA26847.1
Hypothetical protein.
       0.437
AGA26848.1
Response regulator with putative antiterminator output domain; PFAM: Response regulator receiver domain; ANTAR domain.
       0.437
AGA26849.1
PAS domain S-box; PFAM: Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; PAS fold; TIGRFAM: PAS domain S-box.
       0.437
AGA27031.1
PFAM: Bacterial regulatory proteins, tetR family.
  
     0.430
Your Current Organism:
Singulisphaera acidiphila
NCBI taxonomy Id: 886293
Other names: S. acidiphila DSM 18658, Singulisphaera acidiphila DSM 18658, Singulisphaera acidiphila MOB10, Singulisphaera acidiphila str. DSM 18658, Singulisphaera acidiphila strain DSM 18658
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.