STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AGA26989.1TPR repeat-containing protein; PFAM: Tetratricopeptide repeat. (654 aa)    
Predicted Functional Partners:
AGA29642.1
Tetratricopeptide repeat protein.
 
   
 0.692
polA
DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family.
  
 
 0.611
htpG
Molecular chaperone of HSP90 family; Molecular chaperone. Has ATPase activity.
  
 0.591
AGA30854.1
Tetratricopeptide repeat protein.
  
     0.543
AGA30026.1
WD40 repeat-containing protein; PFAM: WD domain, G-beta repeat.
  
 
  0.510
AGA29422.1
WD40 repeat-containing protein; PFAM: WD domain, G-beta repeat; Planctomycete cytochrome C.
  
 
  0.499
AGA27043.1
WD40 repeat-containing protein; PFAM: WD domain, G-beta repeat.
  
 
  0.496
AGA27023.1
WD40 repeat-containing protein; PFAM: WD domain, G-beta repeat; Planctomycete cytochrome C.
  
 
  0.495
AGA30388.1
WD40 repeat-containing protein; PFAM: WD domain, G-beta repeat.
  
 
  0.490
AGA31431.1
WD40 repeat-containing protein; PFAM: WD domain, G-beta repeat.
  
 
  0.490
Your Current Organism:
Singulisphaera acidiphila
NCBI taxonomy Id: 886293
Other names: S. acidiphila DSM 18658, Singulisphaera acidiphila DSM 18658, Singulisphaera acidiphila MOB10, Singulisphaera acidiphila str. DSM 18658, Singulisphaera acidiphila strain DSM 18658
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.