STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AGA27023.1WD40 repeat-containing protein; PFAM: WD domain, G-beta repeat; Planctomycete cytochrome C. (469 aa)    
Predicted Functional Partners:
AGA25682.1
Tfp pilus assembly protein PilF; PFAM: Tetratricopeptide repeat.
  
 
  0.656
AGA29099.1
Hypothetical protein.
  
 
  0.652
AGA26543.1
Hypothetical protein.
  
 
  0.627
AGA27022.1
Hypothetical protein.
       0.625
AGA24469.1
PFAM: CobQ/CobB/MinD/ParA nucleotide binding domain.
  
     0.600
AGA27021.1
WD40 repeat-containing protein; PFAM: WD domain, G-beta repeat.
 
    
0.558
AGA26989.1
TPR repeat-containing protein; PFAM: Tetratricopeptide repeat.
  
 
  0.495
AGA25536.1
PFAM: Anti-sigma-28 factor, FlgM.
  
   0.468
AGA26451.1
Leucine Rich Repeat (LRR)-containing protein.
 
     0.450
AGA27834.1
Peptidyl-prolyl cis-trans isomerase (rotamase) - cyclophilin family; PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides; Belongs to the cyclophilin-type PPIase family.
  
  0.437
Your Current Organism:
Singulisphaera acidiphila
NCBI taxonomy Id: 886293
Other names: S. acidiphila DSM 18658, Singulisphaera acidiphila DSM 18658, Singulisphaera acidiphila MOB10, Singulisphaera acidiphila str. DSM 18658, Singulisphaera acidiphila strain DSM 18658
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.