STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AGA27036.1PFAM: Neutral/alkaline non-lysosomal ceramidase. (481 aa)    
Predicted Functional Partners:
AGA27039.1
Membrane protein involved in colicin uptake; PFAM: Protein of unknown function (DUF1549); Planctomycete cytochrome C; Protein of unknown function (DUF1553).
 
     0.859
AGA27037.1
Sugar phosphate permease; PFAM: Major Facilitator Superfamily.
 
     0.826
AGA27038.1
PFAM: Protein of unknown function (DUF1501).
 
     0.729
AGA29244.1
TIGRFAM: N-acetylglucosamine-6-phosphate deacetylase.
  
 
 0.707
AGA27502.1
PFAM: Neutral/alkaline non-lysosomal ceramidase.
  
     0.695
AGA24559.1
Hypothetical protein.
  
     0.680
AGA27034.1
Enolase superfamily enzyme related to L-alanine-DL-glutamate epimerase; PFAM: Mandelate racemase / muconate lactonizing enzyme, C-terminal domain; Mandelate racemase / muconate lactonizing enzyme, N-terminal domain.
 
     0.680
AGA24828.1
Dienelactone hydrolase-like enzyme; PFAM: Acetyl xylan esterase (AXE1).
  
     0.678
AGA27926.1
PFAM: Beta-galactosidase trimerisation domain.
  
   
 0.669
AGA26651.1
PFAM: Acyl-coenzyme A:6-aminopenicillanic acid acyl-transferase.
 
     0.664
Your Current Organism:
Singulisphaera acidiphila
NCBI taxonomy Id: 886293
Other names: S. acidiphila DSM 18658, Singulisphaera acidiphila DSM 18658, Singulisphaera acidiphila MOB10, Singulisphaera acidiphila str. DSM 18658, Singulisphaera acidiphila strain DSM 18658
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.