STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AGA27074.1Multidrug resistance efflux pump; PFAM: HlyD family secretion protein. (366 aa)    
Predicted Functional Partners:
AGA27073.1
ABC-type multidrug transport system, ATPase component; PFAM: ABC transporter.
 
  
 0.957
AGA27072.1
ABC-type multidrug transport system, permease component.
 
  
 0.954
macB
ABC-type antimicrobial peptide transport system, ATPase component; Non-canonical ABC transporter that contains transmembrane domains (TMD), which form a pore in the inner membrane, and an ATP- binding domain (NBD), which is responsible for energy generation. Confers resistance against macrolides.
 
 
 0.628
AGA28038.1
ABC-type bacteriocin/lantibiotic exporter with N-terminal double-glycine peptidase domain; PFAM: Peptidase C39 family.
  
 
 0.457
AGA29771.1
ABC-type bacteriocin/lantibiotic exporter with N-terminal double-glycine peptidase domain; PFAM: Peptidase C39 family.
  
 
 0.457
AGA28590.1
ABC-type antimicrobial peptide transport system, permease component; PFAM: Predicted permease.
 
    0.432
AGA26866.1
PFAM: Outer membrane efflux protein.
  
   0.430
AGA26867.1
PFAM: Outer membrane efflux protein.
  
   0.430
AGA27278.1
PFAM: Outer membrane efflux protein; TIGRFAM: efflux transporter, outer membrane factor (OMF) lipoprotein, NodT family.
  
   0.428
AGA30958.1
PFAM: Outer membrane efflux protein; LysM domain; TIGRFAM: efflux transporter, outer membrane factor (OMF) lipoprotein, NodT family.
  
   0.428
Your Current Organism:
Singulisphaera acidiphila
NCBI taxonomy Id: 886293
Other names: S. acidiphila DSM 18658, Singulisphaera acidiphila DSM 18658, Singulisphaera acidiphila MOB10, Singulisphaera acidiphila str. DSM 18658, Singulisphaera acidiphila strain DSM 18658
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.