STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AGA27079.1Hypothetical protein. (339 aa)    
Predicted Functional Partners:
AGA28348.1
Hypothetical protein.
  
     0.756
AGA27842.1
Hypothetical protein.
  
     0.698
AGA28764.1
Nuclease-like protein; PFAM: Nuclease-related domain.
  
     0.564
AGA31070.1
Methyltransferase family protein.
  
     0.547
AGA26922.1
Metal-dependent hydrolase, beta-lactamase superfamily III.
  
     0.508
AGA29851.1
Lysophospholipase L1-like esterase; PFAM: GDSL-like Lipase/Acylhydrolase.
  
     0.474
AGA30974.1
Glucose/sorbosone dehydrogenase; PFAM: SMP-30/Gluconolaconase/LRE-like region; Glucose / Sorbosone dehydrogenase.
  
     0.467
ackA-3
Acetate kinase; Catalyzes the formation of acetyl phosphate from acetate and ATP. Can also catalyze the reverse reaction; Belongs to the acetokinase family.
       0.437
AGA27519.1
PFAM: Protein of unknown function (DUF3500).
  
     0.427
AGA27080.1
RNA polymerase sigma factor, sigma-70 family; PFAM: Sigma-70, region 4; Sigma-70 region 2; Protein of unknown function (DUF1559); TIGRFAM: RNA polymerase sigma factor, sigma-70 family; Belongs to the sigma-70 factor family. ECF subfamily.
       0.425
Your Current Organism:
Singulisphaera acidiphila
NCBI taxonomy Id: 886293
Other names: S. acidiphila DSM 18658, Singulisphaera acidiphila DSM 18658, Singulisphaera acidiphila MOB10, Singulisphaera acidiphila str. DSM 18658, Singulisphaera acidiphila strain DSM 18658
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.