STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AGA27095.1Transposase family protein; PFAM: Transposase DDE domain. (489 aa)    
Predicted Functional Partners:
AGA27094.1
Sugar phosphate isomerase/epimerase; PFAM: Xylose isomerase-like TIM barrel.
  
    0.547
AGA26315.1
Hypothetical protein.
  
  
 0.536
AGA26775.1
Hypothetical protein.
  
     0.523
AGA26388.1
Site-specific recombinase, DNA invertase Pin; PFAM: Recombinase; Resolvase, N terminal domain.
  
    0.520
AGA25333.1
Site-specific recombinase, DNA invertase Pin; PFAM: Recombinase; Resolvase, N terminal domain.
  
    0.517
AGA24698.1
Hypothetical protein.
  
  
 0.482
AGA27096.1
Transposase family protein; PFAM: Transposase DDE domain.
 
     0.478
AGA28797.1
PFAM: IstB-like ATP binding protein; Protein of unknown function (DUF3320).
  
    0.470
AGA29049.1
Hypothetical protein.
  
     0.468
AGA24797.1
PFAM: Rhodopirellula transposase.
  
     0.407
Your Current Organism:
Singulisphaera acidiphila
NCBI taxonomy Id: 886293
Other names: S. acidiphila DSM 18658, Singulisphaera acidiphila DSM 18658, Singulisphaera acidiphila MOB10, Singulisphaera acidiphila str. DSM 18658, Singulisphaera acidiphila strain DSM 18658
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.