STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AGA27124.1Putative transcription regulator containing HTH domain; PFAM: Helix-turn-helix. (138 aa)    
Predicted Functional Partners:
AGA27123.1
PFAM: Uncharacterized protein conserved in bacteria (DUF2136).
 
 
 0.961
AGA27795.1
PFAM: Uncharacterized protein conserved in bacteria (DUF2136).
 
 
 0.918
AGA28214.1
PFAM: Uncharacterized protein conserved in bacteria (DUF2136).
 
 
 0.918
AGA30872.1
PFAM: Uncharacterized protein conserved in bacteria (DUF2136).
 
 
 0.918
vapC
Putative nucleic acid-binding protein, contains PIN domain; Toxic component of a toxin-antitoxin (TA) system. An RNase. Belongs to the PINc/VapC protein family.
  
     0.703
vapC-2
Putative nucleic acid-binding protein, contains PIN domain; Toxic component of a toxin-antitoxin (TA) system. An RNase. Belongs to the PINc/VapC protein family.
  
     0.692
AGA30418.1
Putative nucleic acid-binding protein, contains PIN domain; PFAM: PIN domain.
  
     0.666
AGA28633.1
Hypothetical protein; Manually curated.
  
     0.483
AGA28640.1
PFAM: Helix-turn-helix.
  
     0.413
Your Current Organism:
Singulisphaera acidiphila
NCBI taxonomy Id: 886293
Other names: S. acidiphila DSM 18658, Singulisphaera acidiphila DSM 18658, Singulisphaera acidiphila MOB10, Singulisphaera acidiphila str. DSM 18658, Singulisphaera acidiphila strain DSM 18658
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.