STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AGA27260.1PFAM: Cytochrome c; Di-haem cytochrome c peroxidase. (595 aa)    
Predicted Functional Partners:
AGA24532.1
PFAM: Di-haem cytochrome c peroxidase.
  
     0.771
AGA27261.1
PFAM: DNA polymerase III, delta subunit; TIGRFAM: DNA polymerase III, delta subunit.
       0.746
AGA24479.1
PFAM: Di-haem cytochrome c peroxidase.
  
     0.605
AGA27259.1
Hypothetical protein.
       0.522
AGA26197.1
PFAM: Cytochrome c.
 
  
 0.484
AGA27262.1
Hypothetical protein.
       0.484
AGA29107.1
YVTN family beta-propeller repeat protein; PFAM: Di-haem cytochrome c peroxidase; TIGRFAM: 40-residue YVTN family beta-propeller repeat.
  
  
0.432
AGA31468.1
YVTN family beta-propeller repeat protein; PFAM: Cytochrome c; Di-haem cytochrome c peroxidase; TIGRFAM: 40-residue YVTN family beta-propeller repeat.
  
  
0.411
Your Current Organism:
Singulisphaera acidiphila
NCBI taxonomy Id: 886293
Other names: S. acidiphila DSM 18658, Singulisphaera acidiphila DSM 18658, Singulisphaera acidiphila MOB10, Singulisphaera acidiphila str. DSM 18658, Singulisphaera acidiphila strain DSM 18658
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.