STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AGA27276.1Peptidase S16, lon domain protein; PFAM: ATP-dependent protease La (LON) domain. (231 aa)    
Predicted Functional Partners:
AGA26103.1
Ubiquitin-protein ligase; PFAM: Ubiquitin-conjugating enzyme.
    
 0.797
AGA28700.1
DNA repair exonuclease.
  
 
 0.740
AGA26102.1
Dinucleotide-utilizing enzyme possibly involved in molybdopterin or thiamin biosynthesis; PFAM: ThiF family.
    
 0.698
AGA30742.1
Dinucleotide-utilizing enzyme possibly involved in molybdopterin or thiamin biosynthesis; PFAM: MoeZ/MoeB domain; ThiF family.
    
 0.698
AGA24841.1
Hypothetical protein.
    
 0.573
AGA26205.1
Hypothetical protein.
    
 0.573
AGA29203.1
Hypothetical protein.
    
 0.573
AGA31571.1
Hypothetical protein.
    
 0.573
AGA28817.1
SET domain-containing protein; PFAM: SET domain.
    
 0.562
folE
PFAM: GTP cyclohydrolase I; TIGRFAM: GTP cyclohydrolase I.
       0.534
Your Current Organism:
Singulisphaera acidiphila
NCBI taxonomy Id: 886293
Other names: S. acidiphila DSM 18658, Singulisphaera acidiphila DSM 18658, Singulisphaera acidiphila MOB10, Singulisphaera acidiphila str. DSM 18658, Singulisphaera acidiphila strain DSM 18658
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.