STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AGA27329.1Hypothetical protein. (371 aa)    
Predicted Functional Partners:
AGA27926.1
PFAM: Beta-galactosidase trimerisation domain.
  
     0.700
AGA29970.1
Hypothetical protein.
  
     0.699
AGA31199.1
Transposase family protein; PFAM: Transposase DDE domain.
  
     0.694
AGA24465.1
PFAM: Zinc ribbon domain; TIGRFAM: putative regulatory protein, FmdB family; manually curated.
  
     0.692
AGA29336.1
Hypothetical protein.
  
     0.668
AGA28893.1
Transposase.
  
     0.664
AGA24783.1
Transposase.
  
     0.663
AGA24950.1
Transposase.
  
    0.663
AGA26514.1
Transposase.
  
    0.663
AGA26522.1
Transposase.
  
    0.663
Your Current Organism:
Singulisphaera acidiphila
NCBI taxonomy Id: 886293
Other names: S. acidiphila DSM 18658, Singulisphaera acidiphila DSM 18658, Singulisphaera acidiphila MOB10, Singulisphaera acidiphila str. DSM 18658, Singulisphaera acidiphila strain DSM 18658
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.