STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AGA27396.1PFAM: Protein of unknown function (DUF1559); TIGRFAM: prepilin-type N-terminal cleavage/methylation domain. (314 aa)    
Predicted Functional Partners:
AGA27397.1
Hypothetical protein.
       0.538
AGA29091.1
PEGA domain-containing protein; PFAM: PEGA domain.
  
     0.523
AGA30534.1
TIGRFAM: general secretion pathway protein G; prepilin-type N-terminal cleavage/methylation domain.
  
     0.500
AGA29275.1
PFAM: Competence protein A; TIGRFAM: type IV pilus assembly protein PilM.
  
     0.484
AGA27307.1
Hypothetical protein.
  
     0.471
AGA24945.1
PFAM: Sigma-70, region 4; Sigma-70 region 2; TIGRFAM: RNA polymerase sigma factor, sigma-70 family.
  
     0.461
AGA29330.1
UDP-glucose pyrophosphorylase; PFAM: UTP--glucose-1-phosphate uridylyltransferase.
  
     0.456
tatA
Sec-independent protein secretion pathway component; Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin- arginine motif in their signal peptide across membranes. TatA could form the protein-conducting channel of the Tat system.
  
     0.433
AGA31430.1
Anti-anti-sigma regulatory factor (antagonist of anti-sigma factor); PFAM: STAS domain; TIGRFAM: anti-anti-sigma factor.
  
     0.428
rpmB
PFAM: Ribosomal L28 family; TIGRFAM: ribosomal protein L28; Belongs to the bacterial ribosomal protein bL28 family.
  
     0.418
Your Current Organism:
Singulisphaera acidiphila
NCBI taxonomy Id: 886293
Other names: S. acidiphila DSM 18658, Singulisphaera acidiphila DSM 18658, Singulisphaera acidiphila MOB10, Singulisphaera acidiphila str. DSM 18658, Singulisphaera acidiphila strain DSM 18658
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.