STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AGA27414.1Metal-dependent hydrolase; PFAM: Endonuclease/Exonuclease/phosphatase family. (256 aa)    
Predicted Functional Partners:
AGA30743.1
PFAM: Aminotransferase class-V; TIGRFAM: cysteine desulfurase family protein.
  
 
   0.598
AGA27412.1
Protein involved in biosynthesis of mitomycin antibiotics/polyketide fumonisin; PFAM: Phytanoyl-CoA dioxygenase (PhyH).
       0.561
dapF
Diaminopimelate epimerase; Catalyzes the stereoinversion of LL-2,6-diaminoheptanedioate (L,L-DAP) to meso-diaminoheptanedioate (meso-DAP), a precursor of L- lysine and an essential component of the bacterial peptidoglycan.
       0.561
AGA25649.1
Cysteine desulfurase-like protein, SufS subfamily; PFAM: Fe-S metabolism associated domain; Aminotransferase class-V; TIGRFAM: cysteine desulfurases, SufSfamily; Belongs to the class-V pyridoxal-phosphate-dependent aminotransferase family.
   
   0.548
AGA30492.1
Selenocysteine lyase; PFAM: Aminotransferase class-V.
    
   0.545
AGA27415.1
WD40 repeat-containing protein; PFAM: Protein kinase domain; WD domain, G-beta repeat.
       0.473
Your Current Organism:
Singulisphaera acidiphila
NCBI taxonomy Id: 886293
Other names: S. acidiphila DSM 18658, Singulisphaera acidiphila DSM 18658, Singulisphaera acidiphila MOB10, Singulisphaera acidiphila str. DSM 18658, Singulisphaera acidiphila strain DSM 18658
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.