STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AGA27506.1PFAM: Glucose / Sorbosone dehydrogenase. (412 aa)    
Predicted Functional Partners:
AGA27924.1
Hypothetical protein.
  
     0.579
AGA30028.1
Hypothetical protein.
  
     0.528
AGA27698.1
Hypothetical protein.
  
     0.518
AGA29619.1
PDK repeat-containing protein; PFAM: PKD domain.
  
     0.453
AGA26119.1
Putative metal-dependent hydrolase with TIM-barrel fold; PFAM: TatD related DNase.
 
     0.451
AGA31201.1
FG-GAP repeat protein.
  
     0.418
AGA29338.1
Putative AP superfamily protein; PFAM: Type I phosphodiesterase / nucleotide pyrophosphatase.
  
     0.414
AGA29856.1
PFAM: Opioid growth factor receptor (OGFr) conserved region.
  
     0.412
AGA24618.1
Tyrosinase family protein; PFAM: Common central domain of tyrosinase.
  
     0.411
AGA31074.1
Putative Zn-dependent protease; PFAM: Matrixin.
  
     0.407
Your Current Organism:
Singulisphaera acidiphila
NCBI taxonomy Id: 886293
Other names: S. acidiphila DSM 18658, Singulisphaera acidiphila DSM 18658, Singulisphaera acidiphila MOB10, Singulisphaera acidiphila str. DSM 18658, Singulisphaera acidiphila strain DSM 18658
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.